Package index
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add_tracked_job_parent() - Add parent/child id relationship to tracking database
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butterworth_filter_4d() - Apply a Butterworth Filter to a 4D NIfTI Image
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cluster_job_submit() - This function submits a single script to a high-performance cluster using a scheduler (Slurm or TORQUE). It accepts a vector of arguments to be passed to the scheduler and a vector of environment variables that should be passed to the compute node at job execution.
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construct_bids_filename() - Construct BIDS-Compatible Filenames from Extracted Entity Data
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edit_project() - Interactively edit a study configuration by field (field-guided)
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extract_bids_info() - Extract fields from BIDS filenames
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filtfilt_cpp - Zero-Phase IIR Filtering via Forward and Reverse Filtering
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get_fmriprep_outputs() - Identify fMRIPrep-Derived Outputs for a NIfTI File
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get_project_status() - Get processing status for all subjects
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get_subject_status() - Get processing status for a single subject
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get_tracked_job_status() - Query job status in tracking SQLite database
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getline() - Read a Line of Input from the User in Both Interactive and Non-Interactive Sessions
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image_quantile - Compute Quantiles from a 3D or 4D NIfTI Image
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insert_df_sqlite() - helper function to insert a keyed data.frame into the sqlite storage database
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lmfit_residuals_4d - Apply Confound Regression to 4D fMRI Data Using Voxelwise Linear Models
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load_project() - Load a study configuration from a file
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natural_spline_4d - Interpolate fMRI Time Series with Cubic Splines in a NIfTI File
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natural_spline_interp - Cubic spline interpolation with natural spline and linear extrapolation
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parse_cli_args() - Parse CLI-style arguments into a nested list using args_to_df()
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postprocess_subject() - Postprocess a single fMRI BOLD image using a configured pipeline
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remove_nifti_volumes - Remove Specified Timepoints from a 4D NIfTI Image
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resample_template_to_img() - Resample TemplateFlow Mask to fMRIPrep Image Using Python
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run_bids_validation() - Run BIDS validation on the project BIDS directory
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run_fsl_command() - Run an FSL command with optional Singularity container support and structured logging
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run_project() - Run the processing pipeline
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setup_project() - Setup the processing pipeline for a new fMRI study
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summary(<bg_project_cfg>) - summary method for study configuration object
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summary(<bg_status_df>) - Summarize project status
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update_tracked_job_status() - Update Job Status in Tracking SQLite Database
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wait_for_job() - This function pauses execution of an R script while a scheduled qsub job is not yet complete.