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Changelog

Source: NEWS.md

BrainGnomes 0.6-1

  • Added Rcpp automask function, mimicking AFNI 3dAutomask.
  • Use automask to get approximate whole-brain mask for image quantiles in postprocessing (spatial_smooth, intensity_normalize)
  • Use the user-specific mask file in apply_mask, if relevant

BrainGnomes 0.6

Released 2025-08-30

  • Added ROI extraction workflow (extract_rois) with correlation options and a dedicated vignette.
  • Introduced a Flywheel synchronization step for retrieving data.
  • Added support for external BIDS and fMRIPrep directories, including an is_external_path helper, path normalization, and configurable postproc_directory.
  • Enhanced postprocessing: new output_dir argument, direct output movement without symlinks, robust file handling, and optional AROMA cleanup with safety checks for MNI res-2 outputs.
  • Refined project setup and validation by verifying directories before saving, prompting for required containers, and allowing projects to run without a postprocessing directory.
  • Documentation and test improvements, including an expanded quickstart guide and instructions for building the FSL container.